![]() ![]() Pipeliner::run(Pipeliner=HASH(0x1b1077c0)) called at /lab/tools/STAR-Fusion-v1.4.0/STAR-Fusion line 893 ![]() * Running CMD: /lab/tools/STAR-2.6.0c/source/STAR -genomeDir /lab/common/hg19/STAR-Fusion/GRCh37_v19_CTAT_lib_Feb092018/ctat_genome_lib_build_dir/ref_genome.fa.star.idx -outReadsUnmapped None -chimSegmentMin 12 -chimJunctionOverhangMin 12 -alignSJDBoverhangMin 10 -alignMatesGapMax 100000 -alignIntronMax 100000 -alignSJstitchMismatchNmax 5 -1 5 5 -runThreadN 16 -outSAMstrandField intronMotif -outSAMunmapped Within -outSAMtype BAM Unsorted -readFilesIn /lab/projects/rna/1171818/MAP23-00013_5622G1_reads1.fastq /lab/projects/MAP23-00013_5622G1_reads2.fastq -outSAMattrRGline ID:GRPundef -chimMultimapScoreRange 10 -chimMultimapNmax 10 -chimNonchimScoreDropMin 10 -peOverlapNbasesMin 12 -peOverlapMMp 0.1 -genomeLoad NoSharedMemory -twopassMode BasicĮrror, cmd: /lab/tools/STAR-2.6.0c/source/STAR -genomeDir /lab/common/mgp/hg19/STAR-Fusion/GRCh37_v19_CTAT_lib_Feb092018/ctat_genome_lib_build_dir/ref_genome.fa.star.idx -outReadsUnmapped None -chimSegmentMin 12 -chimJunctionOverhangMin 12 -alignSJDBoverhangMin 10 -alignMatesGapMax 100000 -alignIntronMax 100000 -alignSJstitchMismatchNmax 5 -1 5 5 -runThreadN 16 -outSAMstrandField intronMotif -outSAMunmapped Within -outSAMtype BAM Unsorted -readFilesIn /lab/projects/rna/1171818/MAP23-00013_5622G1_reads1.fastq /lab/projects/rna/1171818/MAP23-00013_5622G1_reads2.fastq -outSAMattrRGline ID:GRPundef -chimMultimapScoreRange 10 -chimMultimapNmax 10 -chimNonchimScoreDropMin 10 -peOverlapNbasesMin 12 -peOverlapMMp 0.1 -genomeLoad NoSharedMemory -twopassMode Basic died with ret 11 No such file or directory at /lab/tools/STAR-Fusion-v1.4.0/PerlLib/Pipeliner.pm line 181. CMD: mkdir -p /lab/projects/rna/1171818/star_fusionĬMD: mkdir -p /lab/projects/rna/1171818/star_fusion/_starF_checkpointsĬMD: mkdir -p /lab/projects/rna/1171818/star_fusion/star-fusion.preliminary ![]()
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